| STRUCTURESELECTOR: A web-based software to select and visualize the optimal number of clusters using multiple methods |
60 |
| DARTR: An R package to facilitate analysis of SNP data generated from reduced representation genome sequencing |
47 |
| Minor allele frequency thresholds strongly affect population structure inference with genomic data sets |
35 |
| SymPortal: A novel analytical framework and platform for coral algal symbiont next-generation sequencing ITS2 profiling |
32 |
| Environmental DNA (eDNA) metabarcoding reveals strong discrimination among diverse marine habitats connected by water movement |
28 |
| The hitchhiker's guide to single-locus species delimitation |
22 |
| Minimizing polymerase biases in metabarcoding |
21 |
| ednaoccupancy: An r package for multiscale occupancy modelling of environmental DNA data |
21 |
| Universal target-enrichment baits for anthozoan (Cnidaria) phylogenomics: New approaches to long-standing problems |
20 |
| Laboratory contamination over time during low-biomass sample analysis |
19 |
| Supervised machine learning outperforms taxonomy-based environmental DNA metabarcoding applied to biomonitoring |
19 |
| Measuring the gut microbiome in birds: Comparison of faecal and cloacal sampling |
18 |
| Performance of amplicon and shotgun sequencing for accurate biomass estimation in invertebrate community samples |
17 |
| A MinION-based pipeline for fast and cost-effective DNA barcoding |
17 |
| Promises and pitfalls of using high-throughput sequencing for diet analysis |
17 |
| Comparison of environmental DNA and bulk-sample metabarcoding using highly degenerate cytochrome c oxidase I primers |
17 |
| Metabarcoding for the parallel identification of several hundred predators and their prey: Application to bat species diet analysis |
16 |
| Genome analyses of the new model protist Euplotes vannus focusing on genome rearrangement and resistance to environmental stressors |
16 |
| Integrating three comprehensive data sets shows that mitochondrial DNA variation is linked to species traits and paleogeographic events in European butterflies |
16 |
| Towards robust and repeatable sampling methods in eDNA-based studies |
15 |
| Unlocking biodiversity and conservation studies in high-diversity environments using environmental DNA (eDNA): A test with Guianese freshwater fishes |
15 |
| Introducing ribosomal tandem repeat barcoding for fungi |
15 |
| Microhaplotypes provide increased power from short-read DNA sequences for relationship inference |
15 |
| Long-read DNA metabarcoding of ribosomal RNA in the analysis of fungi from aquatic environments |
15 |
| An integrated framework to identify wildlife populations under threat from climate change |
15 |
| A comparison of regression methods for model selection in individual-based landscape genetic analysis |
15 |
| Tree-sequence recording in SLiM opens new horizons for forward-time simulation of whole genomes |
14 |
| A fungal mock community control for amplicon sequencing experiments |
14 |
| Environmental DNA metabarcoding studies are critically affected by substrate selection |
14 |
| Evaluation of redundancy analysis to identify signatures of local adaptation |
14 |
| Using DNA metabarcoding for simultaneous inference of common vampire bat diet and population structure |
14 |
| Wild GWAS-association mapping in natural populations |
14 |
| Optimized DNA extraction and library preparation for minute arthropods: Application to target enrichment in chalcid wasps used for biocontrol |
14 |
| Sequence capture phylogenomics of historical ethanol-preserved museum specimens: Unlocking the rest of the vault |
13 |
| High-throughput identification and diagnostics of pathogens and pests: Overview and practical recommendations |
13 |
| Boosting DNA metabarcoding for biomonitoring with phylogenetic estimation of operational taxonomic units' ecological profiles |
13 |
| Sorting specimen-rich invertebrate samples with cost-effective NGS barcodes: Validating a reverse workflow for specimen processing |
12 |
| New barcoded primers for efficient retrieval of cercozoan sequences in high-throughput environmental diversity surveys, with emphasis on worldwide biological soil crusts |
12 |
| Double-digest RAD sequencing outperforms microsatellite loci at assigning paternity and estimating relatedness: A proof of concept in a highly promiscuous bird |
12 |
| A practical introduction to Random Forest for genetic association studies in ecology and evolution |
12 |
| A guide to the application of Hill numbers to DNA-based diversity analyses |
11 |
| A DNA barcode library for 200 German flies and midges (Insecta: Diptera) and its implications for metabarcoding-based biomonitoring |
11 |
| Environmental DNA for the enumeration and management of Pacific salmon |
11 |
| Metabarcoding a diverse arthropod mock community |
11 |
| De novo assembly of a chromosome-level reference genome of red-spotted grouper (Epinephelus akaara) using nanopore sequencing and Hi-C |
11 |
| A comparison of droplet digital polymerase chain reaction (PCR), quantitative PCR and metabarcoding for species-specific detection in environmental DNA |
11 |
| Give me a sample of air and I will tell which species are found from your region: Molecular identification of fungi from airborne spore samples |
11 |
| A bioinformatic pipeline for identifying informative SNP panels for parentage assignment from RADseq data |
11 |
| Capture enrichment of aquatic environmental DNA: A first proof of concept |
11 |
| A genomic approach to inferring kinship reveals limited intergenerational dispersal in the yellow fever mosquito |
11 |
