| Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7 |
1020 |
| Comparison of Methods for Molecular Species Delimitation Across a Range of Speciation Scenarios |
54 |
| EPA-ng: Massively Parallel Evolutionary Placement of Genetic Sequences |
48 |
| Multivariate Phylogenetic Comparative Methods: Evaluations, Comparisons, and Recommendations |
37 |
| The Spectre of Too Many Species |
37 |
| Modeling Site Heterogeneity with Posterior Mean Site Frequency Profiles Accelerates Accurate Phylogenomic Estimation |
30 |
| A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-Medoids Clustering |
26 |
| Inferring Phylogenetic Networks Using PhyloNet |
25 |
| Rethinking phylogenetic comparative methods |
24 |
| BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics |
22 |
| Golden Orbweavers Ignore Biological Rules: Phylogenomic and Comparative Analyses Unravel a Complex Evolution of Sexual Size Dimorphism |
19 |
| To Include or Not to Include: The Impact of Gene Filtering on Species Tree Estimation Methods |
19 |
| A Critical Appraisal of the Placement of Xiphosura (Chelicerata) with Account of Known Sources of Phylogenetic Error |
19 |
| Morphological Data Sets Fit a Common Mechanism Much More Poorly than DNA Sequences and Call Into Question the Mkv Model |
18 |
| Resolving Relationships among the Megadiverse Butterflies and Moths with a Novel Pipeline for Anchored Phylogenomics |
18 |
| Rs for Correlated Data: Phylogenetic Models, LMMs, and GLMMs |
17 |
| Using Phylogenomic Data to Explore the Effects of Relaxed Clocks and Calibration Strategies on Divergence Time Estimation: Primates as a Test Case |
17 |
| A Framework for Resolving Cryptic Species: A Case Study from the Lizards of the Australian Wet Tropics |
16 |
| Priors and Posteriors in Bayesian Timing of Divergence Analyses: The Age of Butterflies Revisited |
16 |
| Automated Taxonomic Identification of Insects with Expert-Level Accuracy Using Effective Feature Transfer from Convolutional Networks |
15 |
| Mitochondrial Genome Fragmentation Unites the Parasitic Lice of Eutherian Mammals |
14 |
| Resolving Rapid Radiations within Angiosperm Families Using Anchored Phylogenomics |
14 |
| HyDe: A Python Package for Genome-Scale Hybridization Detection |
13 |
| Inferring Diversification Rate Variation From Phylogenies With Fossils |
12 |
| Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved Elements |
12 |
| A Penalized Likelihood Framework for High-Dimensional Phylogenetic Comparative Methods and an Application to New-World Monkeys Brain Evolution |
12 |
| Coestimating Reticulate Phylogenies and Gene Trees from Multilocus Sequence Data |
12 |
| Genomic Signature of an Avian Lilliput Effect across the K-Pg Extinction |
12 |
| Taming the BEAST-A Community Teaching Material Resource for BEAST 2 |
12 |
| Why Concatenation Fails Near the Anomaly Zone |
12 |
| Impact of Model Violations on the Inference of Species Boundaries Under the Multispecies Coalescent |
12 |
| Conflicting Evolutionary Histories of the Mitochondrial and Nuclear Genomes in New World Myotis Bats |
12 |
| The Efficacy of Consensus Tree Methods for Summarizing Phylogenetic Relationships from a Posterior Sample of Trees Estimated from Morphological Data |
12 |
| Molecular Phylogeny and Dating Reveal a Terrestrial Origin in the Early Carboniferous for Ascaridoid Nematodes |
12 |
| The Effect of Gene Flow on Coalescent-based Species-Tree Inference |
11 |
| Analyzing Contentious Relationships and Outlier Genes in Phylogenomics |
11 |
| Analysis of Phylogenomic Tree Space Resolves Relationships Among Marsupial Families |
11 |
| Information Dropout Patterns in Restriction Site Associated DNA Phylogenomics and a Comparison with Multilocus Sanger Data in a Species-Rich Moth Genus |
11 |
| Testing the Role of the Red Queen and Court Jester as Drivers of the Macroevolution of Apollo Butterflies |
11 |
| Phylogenomic Analysis of the Explosive Adaptive Radiation of the Espeletia Complex (Asteraceae) in the Tropical Andes |
11 |
| Bayesian Divergence-Time Estimation with Genome-Wide Single-Nucleotide Polymorphism Data of Sea Catfishes (Ariidae) Supports Miocene Closure of the Panamanian Isthmus |
11 |
| Lineage Diversity and Size Disparity in Musteloidea: Testing Patterns of Adaptive Radiation Using Molecular and Fossil-Based Methods |
10 |
| Resolving Recent Plant Radiations: Power and Robustness of Genotyping-by-Sequencing |
10 |
| The Past Sure is Tense: On Interpreting Phylogenetic Divergence Time Estimates |
10 |
| Modeling Hybridization Under the Network Multispecies Coalescent |
10 |
| Phylogenetic ComparativeMethods on Phylogenetic Networks with Reticulations |
10 |
| Phylogeny, Macroevolutionary Trends and Historical Biogeography of Sloths: Insights From a Bayesian Morphological Clock Analysis |
10 |
| Integration of Anatomy Ontologies and Evo-Devo Using Structured Markov Models Suggests a New Framework for Modeling Discrete Phenotypic Traits |
9 |
| Cladogenetic and Anagenetic Models of Chromosome Number Evolution: A Bayesian Model Averaging Approach |
9 |
| Use of Continuous Traits Can Improve Morphological Phylogenetics |
9 |
