| Protein secondary structure prediction improved by recurrent neural networks integrated with two-dimensional convolutional neural networks |
9 |
| Integrating network topology, gene expression data and GO annotation information for protein complex prediction |
8 |
| A transfer learning approach via procrustes analysis and mean shift for cancer drug sensitivity prediction |
6 |
| Bioinformatic identification of differentially expressed genes associated with prognosis of locally advanced lymph node-positive prostate cancer |
5 |
| Computational prediction of antifungal peptides via Chou's PseAAC and SVM |
4 |
| An integrated framework for identification of effective and synergistic anti-cancer drug combinations |
4 |
| Training host-pathogen protein-protein interaction predictors |
4 |
| Discovery of novel antimicrobial peptides: A transcriptomic study of the sea anemone Cnidopus japonicus |
3 |
| HisCoM-GGI: Hierarchical structural component analysis of gene-gene interactions |
3 |
| Motif discovery in biological network using expansion tree |
3 |
| Protein function prediction from protein-protein interaction network using gene ontology based neighborhood analysis and physico-chemical features |
3 |
| Integrative analysis of gene expression and DNA methylation using unsupervised feature extraction for detecting candidate cancer biomarkers |
3 |
| Inference of genetic networks using random forests: Assigning different weights for gene expression data |
2 |
| PyPredT6: A python-based prediction tool for identification of Type VI effector proteins |
2 |
| The visualCMAT: A web-server to select and interpret correlated mutations/co-evolving residues in protein families |
2 |
| Refined template selection and combination algorithm significantly improves template-based modeling accuracy |
2 |
| Fast and memory efficient approach for mapping NGS reads to a reference genome |
2 |
| Prediction of oxidoreductase subfamily classes based on RFE-SND-CC-PSSM and machine learning methods |
2 |
| Using two-dimensional convolutional neural networks for identifying GTP binding sites in Rab proteins |
2 |
| DSRIG: Incorporating graphical structure in the regularized modeling of SNP data |
2 |
| MAMMOTh: A new database for curated mathematical models of biomolecular systems |
2 |
| Kernel differential subgraph reveals dynamic changes in biomolecular networks |
2 |
| Proteomic Cinderella: Customized analysis of bulky MS/MS data in one night |
2 |
| Identification of potential drug targets for treatment of refractory epilepsy using network pharmacology |
2 |
| Measuring consistency among gene set analysis methods: A systematic study |
2 |
| New variable selection strategy for analysis of high-dimensional DNA methylation data |
2 |
| ProBAPred: Inferring protein-protein binding affinity by incorporating protein sequence and structural features |
1 |
| A hybrid solver for protein multiple sequence alignment problem |
1 |
| Accurate prediction of human miRNA targets via graph modeling of the miRNA-target duplex |
1 |
| Succinate aggravates NAFLD progression to liver cancer on the onset of obesity: An in silico model |
1 |
| Systematic analysis and integrative discovery of active-site subpocket-specific dehydroquinate synthase inhibitors combating antibiotic-resistant Staphylococcus aureus infection |
1 |
| Computational identification of physicochemical signatures for host tropism of influenza A virus |
1 |
| Dimensionality reduction for protein secondary structure and solvent accesibility prediction |
1 |
| Extending hidden Markov models to allow conditioning on previous observations |
1 |
| Gene multifunctionality scoring using gene ontology |
1 |
| MethyMer: Design of combinations of specific primers for bisulfite sequencing of complete CpG islands |
1 |
| Bacterial promoter prediction: Selection of dynamic and static physical properties of DNA for reliable sequence classification |
1 |
| Toxicity prediction of small drug molecules of androgen receptor using multilevel ensemble model |
1 |
| RNAknot: A new algorithm for RNA secondary structure prediction based on genetic algorithm and GRASP method |
1 |
| INTARNAHELIX-composing RNA-RNA interactions from stable inter-molecular helices boosts bacterial sRNA target prediction |
1 |
| The search of CAR, AhR, ESRs binding sites in promoters of intronic and intergenic microRNAs |
1 |
| ASSA: Fast identification of statistically significant interactions between long RNAs |
1 |
| Convolutional neural network approach to lung cancer classification integrating protein interaction network and gene expression profiles |
1 |
| Neanderthal and Denisovan ancestry in Papuans: A functional study |
1 |
| Relative sensitivity analysis of the predictive properties of sloppy models |
1 |
| Comparative analysis of protein-coding and long non-coding transcripts based on RNA sequence features |
1 |
| Potential HIV-1 fusion inhibitors mimicking gp41-specific broadly neutralizing antibody 10E8: In silico discovery and prediction of antiviral potency |
1 |
| Boosted neural networks scoring functions for accurate ligand docking and ranking |
1 |
| Principal component analysis in protein tertiary structure prediction |
1 |
| GI-Cluster: Detecting genomic islands via consensus clustering on multiple features |
1 |
