| PRSice-2: Polygenic Risk Score software for biobank-scale data |
54 |
| Ultra-deep, long-read nanopore sequencing of mock microbial community standards |
37 |
| Real-time DNA barcoding in a rainforest using nanopore sequencing: opportunities for rapid biodiversity assessments and local capacity building |
33 |
| Efficient generation of complete sequences of MDR-encoding plasmids by rapid assembly of MinION barcoding sequencing data |
32 |
| rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data |
29 |
| Advanced lesion symptom mapping analyses and implementation as BCBtoolkit |
28 |
| zUMIs - A fast and flexible pipeline to process RNA sequencing data with UMIs |
26 |
| LR_Gapcloser: a tiling path-based gap closer that uses long reads to complete genome assembly |
26 |
| Clustering trees: a visualization for evaluating clusterings at multiple resolutions |
23 |
| Nanopore sequencing of long ribosomal DNA amplicons enables portable and simple biodiversity assessments with high phylogenetic resolution across broad taxonomic scale |
22 |
| Benchmarking taxonomic assignments based on 16S rRNA gene profiling of the microbiota from commonly sampled environments |
22 |
| Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry |
21 |
| Chromosomal-level assembly of yellow catfish genome using third-generation DNA sequencing and Hi-C analysis |
21 |
| A chromosome-scale genome assembly of cucumber (Cucumis sativus L.) |
19 |
| The unique composition of Indian gut microbiome, gene catalogue, and associated fecal metabolome deciphered using multi-omics approaches |
18 |
| Chiron: translating nanopore raw signal directly into nucleotide sequence using deep learning |
18 |
| Consistent decreased activity in the putamen in Parkinson's disease: a meta-analysis and an independent validation of resting-state fMRI |
17 |
| GenPipes: an open-source framework for distributed and scalable genomic analyses |
17 |
| Over-optimization of academic publishing metrics: observing Goodhart's Law in action |
17 |
| Access to RNA-sequencing data from 173 plant species: The 1000 Plant transcriptomes initiative (1KP) |
16 |
| 1399 H&E-stained sentinel lymph node sections of breast cancer patients: the CAMELYON dataset |
16 |
| Chromosome-level reference genome and alternative splicing atlas of moso bamboo (Phyllostachys edulis) |
16 |
| The metagenome of the female upper reproductive tract |
16 |
| EEG dataset and OpenBMI toolbox for three BCI paradigms: an investigation into BCI illiteracy |
16 |
| De novo transcriptome assembly: A comprehensive cross-species comparison of short-read RNA-Seq assemblers |
16 |
| Bipartite graphs in systems biology and medicine: a survey of methods and applications |
15 |
| A near complete, chromosome-scale assembly of the black raspberry (Rubus occidentalis) genome |
14 |
| Computer vision-based phenotyping for improvement of plant productivity: a machine learning perspective |
14 |
| NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform |
13 |
| The long noncoding RNA landscape of neuroendocrine prostate cancer and its clinical implications |
13 |
| Disordered gut microbiota and alterations in metabolic patterns are associated with atrial fibrillation |
13 |
| PIRATE: A fast and scalable pangenomics toolbox for clustering diverged orthologues in bacteria |
13 |
| Molecular modularity and asymmetry of the molluscan mantle revealed by a gene expression atlas |
13 |
| Chromosome-scale assemblies reveal the structural evolution of African cichlid genomes |
12 |
| A critical comparison of technologies for a plant genome sequencing project |
12 |
| Genome of an allotetraploid wild peanut Arachis monticola: a de novo assembly |
12 |
| Genome-wide determination of on-target and off-target characteristics for RNA-guided DNA methylation by dCas9 methyltransferases |
11 |
| Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance |
11 |
| PhenoMeNal: processing and analysis of metabolomics data in the cloud |
11 |
| Finding Nemo: hybrid assembly with Oxford Nanopore and Illumina reads greatly improves the clownfish (Amphiprion ocellaris) genome assembly |
11 |
| Single-molecule, full-length transcript sequencing provides insight into the extreme metabolism of the ruby-throated hummingbird Archilochus colubris |
11 |
| Comparative whole genome DNA methylation profiling of cattle sperm and somatic tissues reveals striking hypomethylated patterns in sperm |
11 |
| Bioinformatics applications on Apache Spark |
11 |
| LION/web: a web-based ontology enrichment tool for lipidomic data analysis |
11 |
| PPR-Meta: a tool for identifying phages and plasmids from metagenomic fragments using deep learning |
10 |
| Genome sequence of the corn leaf aphid (Rhopalosiphum maidis Fitch) |
10 |
| Chromosome-scale assembly of the Monopterus genome |
10 |
| The genomes of pecan and Chinese hickory provide insights into Carya evolution and nut nutrition |
10 |
| The draft genomes of five agriculturally important African orphan crops |
10 |
| Giardia secretome highlights secreted tenascins as a key component of pathogenesis |
10 |
