| Scrublet: Computational Identification of Cell Doublets in Single-Cell Transcriptomic Data |
84 |
| Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines |
83 |
| DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors |
66 |
| Unification of Protein Abundance Datasets Yields a Quantitative Saccharomyces cerevisiae Proteome |
57 |
| MHCflurry: Open-Source Class I MHC Binding Affinity Prediction |
55 |
| Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas |
52 |
| Four Key Steps Control Glycolytic Flux in Mammalian Cells |
48 |
| End-to-End Differentiable Learning of Protein Structure |
42 |
| The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations |
34 |
| Integrative Personal Omics Profiles during Periods of Weight Gain and Loss |
31 |
| Compensation of Signal Spillover in Suspension and Imaging Mass Cytometry |
30 |
| Dissection of Influenza Infection In Vivo by Single-Cell RNA Sequencing |
27 |
| Simultaneous Multiplexed Imaging of mRNA and Proteins with Subcellular Resolution in Breast Cancer Tissue Samples by Mass Cytometry |
26 |
| Systematic Evaluation of Molecular Networks for Discovery of Disease Genes |
24 |
| Integration of Multi-omics Data from Mouse Diversity Panel Highlights Mitochondrial Dysfunction in Non-alcoholic Fatty Liver Disease |
23 |
| Unsupervised Trajectory Analysis of Single-Cell RNA-Seq and Imaging Data Reveals Alternative Tuft Cell Origins in the Gut |
22 |
| A Pan-Cancer Analysis Reveals High-Frequency Genetic Alterations in Mediators of Signaling by the TGF-beta Superfamily |
22 |
| Quantitative Analysis Reveals that Actin and Src-Family Kinases Regulate Nuclear YAP1 and Its Export |
21 |
| Quantifying Drug Combination Synergy along Potency and Efficacy Axes |
21 |
| Decomposing Cell Identity for Transfer Learning across Cellular Measurements, Platforms, Tissues, and Species |
20 |
| BioJupies: Automated Generation of Interactive Notebooks for RNA-Seq Data Analysis in the Cloud |
20 |
| Chemical Crosslinking Mass Spectrometry Analysis of Protein Conformations and Supercomplexes in Heart Tissue |
20 |
| LipiDex: An Integrated Software Package for High-Confidence Lipid Identification |
19 |
| Juicebox.js Provides a Cloud-Based Visualization System for Hi-C Data |
18 |
| Synthetic Biology and Engineered Live Biotherapeutics: Toward Increasing System Complexity |
18 |
| Protein Phase Separation Provides Long-Term Memory of Transient Spatial Stimuli |
18 |
| A Multi-center Study on the Reproducibility of Drug-Response Assays in Mammalian Cell Lines |
17 |
| Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq |
17 |
| Quantitative Missense Variant Effect Prediction Using Large-Scale Mutagenesis Data |
17 |
| Assembling the Community-Scale Discoverable Human Proteome |
17 |
| Machine Learning Predicts the Yeast Metabolome from the Quantitative Proteome of Kinase Knockouts |
17 |
| exceRpt: A Comprehensive Analytic Platform for Extracellular RNA Profiling |
16 |
| Genome-Scale Oscillations in DNA Methylation during Exit from Pluripotency |
15 |
| Phenotypic Image Analysis Software Tools for Exploring and Understanding Big Image Data from Cell-Based Assays |
15 |
| The Genomic Landscape and Pharmacogenomic Interactions of Clock Genes in Cancer Chronotherapy |
15 |
| Circadian Proteomic Analysis Uncovers Mechanisms of Post-Transcriptional Regulation in Metabolic Pathways |
15 |
| MultiPLIER: A Transfer Learning Framework for Transcriptomics Reveals Systemic Features of Rare Disease |
15 |
| Multi-omic Profiling Reveals Dynamics of the Phased Progression of Pluripotency |
15 |
| Interrogation of Mammalian Protein Complex Structure, Function, and Membership Using Genome-Scale Fitness Screens |
15 |
| Reserve Flux Capacity in the Pentose Phosphate Pathway Enables Escherichia coli's Rapid Response to Oxidative Stress |
15 |
| A Landscape of Metabolic Variation across Tumor Types |
14 |
| Frequency Modulation of Transcriptional Bursting Enables Sensitive and Rapid Gene Regulation |
14 |
| The Potential for Convergence between Synthetic Biology and Bioelectronics |
14 |
| ROS and Oxidative Stress Are Elevated in Mitosis during Asynchronous Cell Cycle Progression and Are Exacerbated by Mitotic Arrest |
14 |
| Before and After: Comparison of Legacy and Harmonized TCGA Genomic Data Commons' Data |
14 |
| Systems Biology of Cancer Metastasis |
14 |
| Enhancing Evolutionary Couplings with Deep Convolutional Neural Networks |
13 |
| Rare Cell Detection by Single-Cell RNA Sequencing as Guided by Single-Molecule RNA FISH |
13 |
| GeneGini: Assessment via the Gini Coefficient of Reference Housekeeping'' Genes and Diverse Human Transporter Expression Profiles |
13 |
| Plasma Proteome Profiling Reveals Dynamics of Inflammatory and Lipid Homeostasis Markers after Roux-En-Y Gastric Bypass Surgery |
13 |
