| Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10 |
349 |
| TreeTime: Maximum-likelihood phylodynamic analysis |
55 |
| Cameroonian fruit bats harbor divergent viruses, including rotavirus H, bastroviruses, and picobirnaviruses using an alternative genetic code |
18 |
| Co-circulation of genetically distinct highly pathogenic avian influenza A clade 2.3.4.4 (H5N6) viruses in wild waterfowl and poultry in Europe and East Asia, 2017-18 |
14 |
| Identification and characterization of Coronaviridae genomes from Vietnamese bats and rats based on conserved protein domains |
13 |
| Viral invasion fitness across a continuum from lysis to latency |
13 |
| The virome of Drosophila suzukii, an invasive pest of soft fruit |
11 |
| Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver |
11 |
| Inter- and intracontinental migrations and local differentiation have shaped the contemporary epidemiological landscape of canine parvovirus in South America |
10 |
| Why viruses sometimes disperse in groups |
9 |
| Measurements of intrahost viral diversity require an unbiased diversity metric |
9 |
| Hidden diversity and evolution of viruses in market fish |
7 |
| Beneficial coinfection can promote within-host viral diversity |
7 |
| Novel hepatitis D-like agents in vertebrates and invertebrates |
7 |
| Identifying the patterns and drivers of Puumala hantavirus enzootic dynamics using reservoir sampling |
7 |
| Potato virus Y; the Andean connection |
7 |
| Emergence of norovirus strains: A tale of two genes |
7 |
| Role of host genetic diversity for susceptibility-to-infection in the evolution of virulence of a plant virus |
6 |
| Cytomegalovirus distribution and evolution in hominines |
6 |
| Within-host infectious disease models accommodating cellular coinfection, with an application to influenza |
6 |
| Low-fidelity Venezuelan equine encephalitis virus polymerase mutants to improve live-attenuated vaccine safety and efficacy |
6 |
| Chikungunya virus evolution following a large 3 ' UTR deletion results in host-specific molecular changes in protein-coding regions |
6 |
| Tracking external introductions of HIV using phylodynamics reveals a major source of infections in rural KwaZulu-Natal, South Africa |
6 |
| Inferring the age difference in HIV transmission pairs by applying phylogenetic methods on the HIV transmission network of the Swiss HIV Cohort Study |
5 |
| Changes on the viral capsid surface during the evolution of porcine circovirus type 2 (PCV2) from 2009 till 2018 may lead to a better receptor binding |
5 |
| Link between the numbers of particles and variants founding new HIV-1 infections depends on the timing of transmission |
5 |
| Gut virome of mammals and birds reveals high genetic diversity of the family Microviridae |
5 |
| Contrasting selective patterns across the segmented genome of bluetongue virus in a global reassortment hotspot |
4 |
| The influence of phylodynamic model specifications on parameter estimates of the Zika virus epidemic |
4 |
| The discovery of three new hare lagoviruses reveals unexplored viral diversity in this genus |
4 |
| Mutational load causes stochastic evolutionary outcomes in acute RNA viral infection |
4 |
| Sustained Wolbachia-mediated blocking of dengue virus isolates following serial passage in Aedes aegypti cell culture |
4 |
| Intra- and interpatient evolution of enterovirus D68 analyzed by whole-genome deep sequencing |
4 |
| Modular nature of simian foamy virus genomes and their evolutionary history |
4 |
| On the stability of sequences inserted into viral genomes |
4 |
| Low evolutionary rate of infectious pancreatic necrosis virus (IPNV) in Italy is associated with reduced virulence in trout |
4 |
| On the importance of negative controls in viral landscape phylogeography |
4 |
| Endogenous amdoparvovirus-related elements reveal insights into the biology and evolution of vertebrate parvoviruses |
4 |
| Estimating the mutational fitness effects distribution during early HIV infection |
4 |
| Comparative genetic and genomic analysis of the novel fusellovirus Sulfolobus spindle-shaped virus 10 |
3 |
| Where do all the subtypes go? Temporal dynamics of H8-H12 influenza A viruses in waterfowl |
3 |
| Divergence dating using mixed effects clock modelling: An application to HIV-1 |
3 |
| Novel insights into endogenous RNA viral elements in Ixodes scapularis and other arbovirus vector genomes |
3 |
| Selective constraint and adaptive potential of West Nile virus within and among naturally infected avian hosts and mosquito vectors |
3 |
| SANTA-SIM: simulating viral sequence evolution dynamics under selection and recombination |
3 |
| Genetic diversity and cross-species transmission of kobuviruses in Vietnam |
3 |
| Incorporating sampling uncertainty in the geospatial assignment of taxa for virus phylogeography |
3 |
| Mosquito bottlenecks alter viral mutant swarm in a tissue and time-dependent manner with contraction and expansion of variant positions and diversity |
3 |
| Inferring time-dependent migration and coalescence patterns from genetic sequence and predictor data in structured populations |
2 |
| Comparing patterns and scales of plant virus phylogeography: Rice yellow mottle virus in Madagascar and in continental Africa |
2 |
