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EnDeep4mC predicts DNA N4-methylcytosine sites using a dual-adaptive feature encoding framework in deep ensemble
Author: Zhang, Shuyu; Zou, Quan; Niu, Mengting; Lv, Zhibin; Stalin, Antony; Luo, Ximei
Journal: GENOME RESEARCH. 2026; Vol. 36, Issue 3, pp. 589-599. DOI: 10.1101/gr.280977.125
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Pangenome analysis reveals families of ubiquitin-ligase adaptors as key genomic divergence drivers that lead to hybrid incompatibilit
Author: Xie, Dongying; Ye, Pohao; Ma, Yiming; Zhao, Zhongying
Journal: GENOME RESEARCH. 2026; Vol. 36, Issue 3, pp. 506-521. DOI: 10.1101/gr.280885.125
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Strain-level metagenomic profiling using pangenome graphs with PanTa
Author: Zhang, Wenhai; Liu, Yuansheng; Li, Guangyi; Xu, Jialu; Chen, Enlian; Schonhuth, Alexander; Luo, Xiao
Journal: GENOME RESEARCH. 2026; Vol. 36, Issue 2, pp. 405-420. DOI: 10.1101/gr.280858.125
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A scalable computational framework for predicting gene expression from candidate cis-regulatory element
Author: Zhang, Qinhu; Wang, Siguo; Li, Zhipeng; Bao, Wenzheng; Liu, Wenjian; Huang, De-Shuang
Journal: GENOME RESEARCH. 2026; Vol. 36, Issue 2, pp. 361-374. DOI: 10.1101/gr.281219.125
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The SynMall resource for characterizing the functional impact of synonymous variatio
Author: Ye, Chen; Li, Xiaoyan; Cheng, Na; Su, Yansen; Xia, Junfeng
Journal: GENOME RESEARCH. 2026; Vol. 36, Issue 2, pp. 421-431. DOI: 10.1101/gr.281257.125
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Stable genome structures in living fossil fishe
Author: Wang, Cheng; Brownstein, Chase D.; Chen, Wenjun; Ding, Zufa; Yu, Dan; Deng, Yu; Feng, Chenguang; Near, Thomas J.; He, Shunping; Yang, Liandong
Journal: GENOME RESEARCH. 2026; Vol. 36, Issue 2, pp. 318-329. DOI: 10.1101/gr.280800.125
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scSHEFT enables multiomics label transfer from scRNA-seq to scATAC-seq through dual alignmen
Author: Huang, Zhitao; Zheng, Ruiqing; Jia, Pengzhen; Yan, Xuhua; Chen, Jinmiao; Li, Min
Journal: GENOME RESEARCH. 2026; Vol. 36, Issue 2, pp. 387-396. DOI: 10.1101/gr.280410.125
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MHC in newts illuminates the evolutionary dynamics of complex regions in giant genome
Author: Babik, Wieslaw; Dudek, Katarzyna; Palomar, Gemma; Marszalek, Marzena; Dubin, Grzegorz; Yun, Maximina H.; Migalska, Magdalena
Journal: GENOME RESEARCH. 2026; Vol. 36, Issue 2, pp. 303-317. DOI: 10.1101/gr.281127.125
