| Current best practices in single-cell RNA-seq analysis: a tutorial |
112 |
| Data-independent acquisition-based SWATH-MS for quantitative proteomics: a tutorial |
99 |
| Multi-Omics Factor Analysis-a framework for unsupervised integration of multi-omics data sets |
62 |
| A deep proteome and transcriptome abundance atlas of 29 healthy human tissues |
61 |
| Deciphering microbial interactions in synthetic human gut microbiome communities |
36 |
| Plasma proteome profiling discovers novel proteins associated with non-alcoholic fatty liver disease |
30 |
| Mapping the O-glycoproteome using site-specific extraction of O-linked glycopeptides (EXoO) |
27 |
| Thermal proteome profiling in bacteria: probing protein state in vivo |
25 |
| Integrative multi-omics analysis of intestinal organoid differentiation |
24 |
| Defining the RNA interactome by total RNA-associated protein purification |
22 |
| An integrated workflow for crosslinking mass spectrometry |
20 |
| Using single-cell genomics to understand developmental processes and cell fate decisions |
18 |
| Complex-centric proteome profiling by SEC-SWATH-MS |
18 |
| Unraveling the hidden universe of small proteins in bacterial genomes |
16 |
| Dynamic control of endogenous metabolism with combinatorial logic circuits |
16 |
| Forces driving the three-dimensional folding of eukaryotic genomes |
15 |
| Comprehensive innate immune profiling of chikungunya virus infection in pediatric cases |
15 |
| Fibroblast state switching orchestrates dermal maturation and wound healing |
15 |
| Tuning dCas9's ability to block transcription enables robust, noiseless knockdown of bacterial genes |
14 |
| Targeting CDK2 overcomes melanoma resistance against BRAF and Hsp90 inhibitors |
13 |
| Absolute quantification of translational regulation and burden using combined sequencing approaches |
12 |
| High-throughput discovery of functional disordered regions: investigation of transactivation domains |
12 |
| Wave patterns organize cellular protrusions and control cortical dynamics |
12 |
| Molecular transitions in early progenitors during human cord blood hematopoiesis |
12 |
| Genomewide phenotypic analysis of growth, cell morphogenesis, and cell cycle events in Escherichia coli |
12 |
| Multiplex transcriptional characterizations across diverse bacterial species using cell-free systems |
12 |
| A conserved mechanism drives partition complex assembly on bacterial chromosomes and plasmids |
11 |
| R2-P2 rapid-robotic phosphoproteomics enables multidimensional cell signaling studies |
11 |
| Widespread inter-individual gene expression variability in Arabidopsis thaliana |
10 |
| Characterizing meiotic chromosomes' structure and pairing using a designer sequence optimized for Hi-C |
10 |
| Endogenous fluctuations of OCT4 and SOX2 bias pluripotent cell fate decisions |
10 |
| Enzyme promiscuity shapes adaptation to novel growth substrates |
10 |
| INKA, an integrative data analysis pipeline for phosphoproteomic inference of active kinases |
10 |
| Large-scale image-based profiling of single-cell phenotypes in arrayed CRISPR-Cas9 gene perturbation screens |
10 |
| Evidence that the human cell cycle is a series of uncoupled, memoryless phases |
10 |
| De novo gene signature identification from single-cell RNA-seq with hierarchical Poisson factorization |
10 |
| Bicoid gradient formation mechanism and dynamics revealed by protein lifetime analysis |
10 |
| Quantification and discovery of sequence determinants of protein-per-mRNA amount in 29 human tissues |
9 |
| Synthesis and degradation of FtsZ quantitatively predict the first cell division in starved bacteria |
9 |
| Deep scanning lysine metabolism in Escherichia coli |
9 |
| High-resolution mapping of cancer cell networks using co-functional interactions |
9 |
| A resource of variant effect predictions of single nucleotide variants in model organisms |
9 |
| Estrogen-dependent control and cell-to-cell variability of transcriptional bursting |
9 |
| netDx: interpretable patient classification using integrated patient similarity networks |
9 |
| Systematic characterization of pan-cancer mutation clusters |
8 |
| Proteome-wide analysis of phospho-regulated PDZ domain interactions |
7 |
| Identification of an oncogenic network with prognostic and therapeutic value in prostate cancer |
7 |
| Metabolic oscillations on the circadian time scale in Drosophila cells lacking clock genes |
7 |
| Toward an integrated map of genetic interactions in cancer cells |
7 |
| Combinatorial prediction of marker panels from single-cell transcriptomic data |
6 |
