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AutoGERN: single-cell RNA-seq gene regulatory network inference via explicit link modeling and adaptive architecture
Author: Wang, Jiacheng; Chen, Yaojia; Zou, Quan; Luo, Ximei
Journal: BIOINFORMATICS. 2026; Vol. 42, Issue 4, pp. -. DOI: 10.1093/bioinformatics/btag143
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Enhancing mutation impact prediction in protein-protein interactions through interpretable graph-based multi-level feature interaction
Author: Wu, Shiwei; Xu, Nan; Xin, Xiaohui; Zhang, Min; Liu, Haoliang; Zhu, Hongjia; Wei, Zhenyu; Zhao, Chengkui; Yu, Lei; Feng, Weixing
Journal: BIOINFORMATICS. 2026; Vol. 42, Issue 4, pp. -. DOI: 10.1093/bioinformatics/btag150
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SA2E: spatial-aware auto-encoder for cell type deconvolution of spatial transcriptomics dat
Author: Ma, Yaxiong; Dou, Zengfa; Zha, Yuhong; Ma, Xiaoke
Journal: BIOINFORMATICS. 2026; Vol. 42, Issue 4, pp. -. DOI: 10.1093/bioinformatics/btag133
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DrugBLIP: exploring the protein-molecule interaction mechanisms with a multi-task learning graph transforme
Author: Wang, Rubo; Gao, Xingyu; Zhao, Peilin
Journal: BIOINFORMATICS. 2026; Vol. 42, Issue 4, pp. -. DOI: 10.1093/bioinformatics/btag069
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A novel deep learning-driven framework for improving lncRNA comprehensive annotation with LncADeep 2.
Author: Zhou, Yiyan; Hou, Jiaheng; Xie, Haoling; Lin, Nuoshi; Yang, Cheng; Yin, Hengchuang; Ding, Wanqiu; Zhu, Huaiqiu
Journal: BIOINFORMATICS. 2026; Vol. 42, Issue 4, pp. -. DOI: 10.1093/bioinformatics/btag162
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DeepLMI: deep feature mining with a globally enhanced graph convolutional network for robust lncRNA-miRNA interaction predictio
Author: Huang, Zhijian; Chen, Kai; Wang, Xianshu; Wang, Junheng; Shen, Siyuan; Zhang, Yuanpeng; Wu, Min; Deng, Lei
Journal: BIOINFORMATICS. 2026; Vol. 42, Issue 4, pp. -. DOI: 10.1093/bioinformatics/btag145
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NumMolFormer: an explicit functional group number-guided framework for structure-based drug desig
Author: Zeng, Zhicun; Wu, Yifan; Lu, Zhangli; Li, Min
Journal: BIOINFORMATICS. 2026; Vol. 42, Issue 4, pp. -. DOI: 10.1093/bioinformatics/btag164
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MAISNet: a multi-species integrated graph neural network for acetylcholinesterase inhibitor screenin
Author: Shao, Dan; Liang, Shengjie; Xiong, Yucong; Liang, Guangmin
Journal: BIOINFORMATICS. 2026; Vol. 42, Issue 4, pp. -. DOI: 10.1093/bioinformatics/btag153
