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Decoding Connectivity Map-based drug repurposing for oncotherapy
Author: Zhao, Yuanchun; Chen, Xingqi; Chen, Jiajia; Qi, Xin
Journal: BRIEFINGS IN BIOINFORMATICS. 2023; Vol. , Issue , pp. -. DOI: 10.1093/bib/bbad142
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SmartGate is a spatial metabolomics tool for resolving tissue structures
Author: Xiao, Kaixuan; Wang, Yu; Dong, Kangning; Zhang, Shihua
Journal: BRIEFINGS IN BIOINFORMATICS. 2023; Vol. , Issue , pp. -. DOI: 10.1093/bib/bbad141
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A comprehensive assessment and comparison of tools for HLA class I peptide-binding prediction
Author: Wang, Meng; Kurgan, Lukasz; Li, Min
Journal: BRIEFINGS IN BIOINFORMATICS. 2023; Vol. , Issue , pp. -. DOI: 10.1093/bib/bbad150
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Transformer-based anti-noise models for CRISPR-Cas9 off-target activities prediction
Author: Guan, Zengrui; Jiang, Zhenran
Journal: BRIEFINGS IN BIOINFORMATICS. 2023; Vol. , Issue , pp. -. DOI: 10.1093/bib/bbad127
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NSRGRN: a network structure refinement method for gene regulatory network inference
Author: Liu, Wei; Yang, Yu; Lu, Xu; Fu, Xiangzheng; Sun, Ruiqing; Yang, Li; Peng, Li
Journal: BRIEFINGS IN BIOINFORMATICS. 2023; Vol. , Issue , pp. -. DOI: 10.1093/bib/bbad129
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TripletCell: a deep metric learning framework for accurate annotation of cell types at the single-cell level
Author: Liu, Yan; Wei, Guo; Li, Chen; Shen, Long-Chen; Gasser, Robin B.; Song, Jiangning; Chen, Dijun; Yu, Dong-Jun
Journal: BRIEFINGS IN BIOINFORMATICS. 2023; Vol. , Issue , pp. -. DOI: 10.1093/bib/bbad132
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Graph deep learning enabled spatial domains identification for spatial transcriptomics
Author: Liu, Teng; Fang, Zhao-Yu; Li, Xin; Zhang, Li-Ning; Cao, Dong-Sheng; Yin, Ming-Zhu
Journal: BRIEFINGS IN BIOINFORMATICS. 2023; Vol. , Issue , pp. -. DOI: 10.1093/bib/bbad146
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Dimensionality reduction and visualization of single-cell RNA-seq data with an improved deep variational autoencoder
Author: Jiang, Jing; Xu, Junlin; Liu, Yuansheng; Song, Bosheng; Guo, Xiulan; Zeng, Xiangxiang; Zou, Quan
Journal: BRIEFINGS IN BIOINFORMATICS. 2023; Vol. , Issue , pp. -. DOI: 10.1093/bib/bbad152